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Lanthanum in PDB 6ip9: Crystal Structure of Lanthanum Ion (LA3+) Bound Bovine Alpha- Lactalbumin

Protein crystallography data

The structure of Crystal Structure of Lanthanum Ion (LA3+) Bound Bovine Alpha- Lactalbumin, PDB code: 6ip9 was solved by P.Prakash, S.D.Yarramala, C.P.Rao, P.Bhaumik, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.72 / 1.85
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 47.450, 47.450, 89.840, 90.00, 90.00, 120.00
R / Rfree (%) 19.7 / 21.6

Lanthanum Binding Sites:

The binding sites of Lanthanum atom in the Crystal Structure of Lanthanum Ion (LA3+) Bound Bovine Alpha- Lactalbumin (pdb code 6ip9). This binding sites where shown within 5.0 Angstroms radius around Lanthanum atom.
In total only one binding site of Lanthanum was determined in the Crystal Structure of Lanthanum Ion (LA3+) Bound Bovine Alpha- Lactalbumin, PDB code: 6ip9:

Lanthanum binding site 1 out of 1 in 6ip9

Go back to Lanthanum Binding Sites List in 6ip9
Lanthanum binding site 1 out of 1 in the Crystal Structure of Lanthanum Ion (LA3+) Bound Bovine Alpha- Lactalbumin


Mono view


Stereo pair view

A full contact list of Lanthanum with other atoms in the La binding site number 1 of Crystal Structure of Lanthanum Ion (LA3+) Bound Bovine Alpha- Lactalbumin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:La203

b:37.6
occ:0.70
OD1 A:ASP82 2.1 46.2 1.0
O A:ASP84 2.4 35.0 1.0
O A:LYS79 2.4 34.4 1.0
OD1 A:ASP87 2.5 32.3 1.0
O A:HOH326 2.5 35.2 1.0
O A:HOH310 2.6 28.5 1.0
OD1 A:ASP88 2.6 29.1 1.0
O A:HOH322 2.7 36.5 1.0
CG A:ASP82 2.8 49.5 1.0
OD2 A:ASP82 2.9 53.9 1.0
CG A:ASP87 3.5 34.5 1.0
C A:ASP84 3.6 35.1 1.0
C A:LYS79 3.7 30.2 1.0
CG A:ASP88 3.8 27.2 1.0
OD2 A:ASP87 3.9 34.7 1.0
CB A:ASP82 4.3 50.3 1.0
OD2 A:ASP88 4.4 31.0 1.0
N A:ASP88 4.5 25.5 1.0
CA A:PHE80 4.5 25.7 1.0
N A:PHE80 4.5 27.6 1.0
N A:LEU85 4.5 33.0 1.0
CA A:ASP84 4.5 39.6 1.0
CA A:LEU85 4.6 28.7 1.0
N A:ASP84 4.6 40.0 1.0
CA A:LYS79 4.6 31.6 1.0
CB A:ASP84 4.6 42.5 1.0
O A:ASP82 4.7 39.2 1.0
O A:HOH353 4.7 38.4 1.0
N A:ASP87 4.7 31.6 1.0
N A:ASP82 4.8 42.3 1.0
C A:ASP82 4.8 43.2 1.0
CB A:ASP87 4.8 34.1 1.0
CA A:ASP82 4.9 45.4 1.0
CB A:LYS79 4.9 32.8 1.0
C A:LEU85 4.9 29.2 1.0
C A:PHE80 5.0 28.2 1.0
CB A:ASP88 5.0 23.9 1.0
N A:THR86 5.0 32.0 1.0
OD1 A:ASP84 5.0 40.3 1.0

Reference:

D.S.Yarramala, P.Prakash, D.S.Ranade, S.Doshi, P.P.Kulkarni, P.Bhaumik, C.P.Rao. Cytotoxicity of Apo Bovine Alpha-Lactalbumin Complexed with LA3+on Cancer Cells Supported By Its High Resolution Crystal Structure. Sci Rep V. 9 1780 2019.
ISSN: ESSN 2045-2322
PubMed: 30741951
DOI: 10.1038/S41598-018-38024-1
Page generated: Mon Dec 14 03:14:34 2020

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