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Lanthanum in PDB 5ytq: Crystal Structure of TTHA0139 L34A with Lanthanum From Thermus Thermophilus HB8

Protein crystallography data

The structure of Crystal Structure of TTHA0139 L34A with Lanthanum From Thermus Thermophilus HB8, PDB code: 5ytq was solved by K.Takao, M.Inoue, K.Fukui, T.Yano, R.Masui, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.84 / 2.39
Space group P 31 1 2
Cell size a, b, c (Å), α, β, γ (°) 50.224, 50.224, 174.648, 90.00, 90.00, 120.00
R / Rfree (%) 26.3 / 27.4

Lanthanum Binding Sites:

The binding sites of Lanthanum atom in the Crystal Structure of TTHA0139 L34A with Lanthanum From Thermus Thermophilus HB8 (pdb code 5ytq). This binding sites where shown within 5.0 Angstroms radius around Lanthanum atom.
In total 5 binding sites of Lanthanum where determined in the Crystal Structure of TTHA0139 L34A with Lanthanum From Thermus Thermophilus HB8, PDB code: 5ytq:
Jump to Lanthanum binding site number: 1; 2; 3; 4; 5;

Lanthanum binding site 1 out of 5 in 5ytq

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Lanthanum binding site 1 out of 5 in the Crystal Structure of TTHA0139 L34A with Lanthanum From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Lanthanum with other atoms in the La binding site number 1 of Crystal Structure of TTHA0139 L34A with Lanthanum From Thermus Thermophilus HB8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:La101

b:63.8
occ:1.00
OE1 B:GLU5 2.5 71.9 1.0
OE2 A:GLU15 2.6 71.4 1.0
OE1 A:GLU15 2.7 73.0 1.0
OE2 A:GLU16 2.8 64.3 1.0
CD A:GLU15 2.9 70.5 1.0
OE1 A:GLU16 2.9 71.3 1.0
CD A:GLU16 3.2 65.2 1.0
CD B:GLU5 3.6 77.1 1.0
OE2 B:GLU5 4.0 77.7 1.0
CG A:GLU15 4.3 72.4 1.0
O B:GLU5 4.4 74.7 1.0
CB A:SER14 4.6 56.7 1.0
O A:HOH205 4.6 63.8 1.0
CG A:GLU16 4.7 59.8 1.0
O A:HOH209 4.8 60.1 1.0
N A:GLU15 4.8 58.2 1.0
CA B:GLU5 4.8 79.6 1.0
CG B:GLU5 4.8 81.0 1.0
CB B:GLU5 4.9 79.8 1.0

Lanthanum binding site 2 out of 5 in 5ytq

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Lanthanum binding site 2 out of 5 in the Crystal Structure of TTHA0139 L34A with Lanthanum From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Lanthanum with other atoms in the La binding site number 2 of Crystal Structure of TTHA0139 L34A with Lanthanum From Thermus Thermophilus HB8 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:La102

b:0.7
occ:1.00
OE2 B:GLU15 2.5 96.2 1.0
N A:LYS4 2.6 1.0 1.0
CD B:GLU15 3.4 95.4 1.0
CA A:LYS4 3.5 1.0 1.0
CG B:GLU15 4.0 88.6 1.0
LA B:LA101 4.1 90.0 1.0
OE1 B:GLU15 4.2 96.7 1.0
N A:GLU5 4.2 0.9 1.0
C A:LYS4 4.4 0.6 1.0
CB A:LYS4 4.6 0.3 1.0
OE2 B:GLU16 4.9 94.1 1.0

Lanthanum binding site 3 out of 5 in 5ytq

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Lanthanum binding site 3 out of 5 in the Crystal Structure of TTHA0139 L34A with Lanthanum From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Lanthanum with other atoms in the La binding site number 3 of Crystal Structure of TTHA0139 L34A with Lanthanum From Thermus Thermophilus HB8 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:La101

b:90.0
occ:1.00
OE2 B:GLU15 2.5 96.2 1.0
OE1 B:GLU15 2.8 96.7 1.0
OE2 B:GLU16 2.9 94.1 1.0
OE1 B:GLU16 2.9 95.7 1.0
CD B:GLU15 3.0 95.4 1.0
CD B:GLU16 3.3 91.6 1.0
CA A:LYS4 3.7 1.0 1.0
LA A:LA102 4.1 0.7 1.0
C A:LYS4 4.3 0.6 1.0
CB A:LYS4 4.5 0.3 1.0
N A:LYS4 4.5 1.0 1.0
CG B:GLU15 4.5 88.6 1.0
O A:GLU5 4.6 91.4 1.0
N A:GLU5 4.6 0.9 1.0
CG B:GLU16 4.8 85.5 1.0
CB B:SER14 4.8 72.7 1.0

Lanthanum binding site 4 out of 5 in 5ytq

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Lanthanum binding site 4 out of 5 in the Crystal Structure of TTHA0139 L34A with Lanthanum From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Lanthanum with other atoms in the La binding site number 4 of Crystal Structure of TTHA0139 L34A with Lanthanum From Thermus Thermophilus HB8 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:La101

b:0.9
occ:1.00
NE2 C:HIS67 4.2 1.0 1.0
O C:HOH205 4.4 87.2 1.0
CE1 C:HIS67 4.8 0.8 1.0
O C:ALA70 4.9 0.9 1.0
CD2 C:HIS67 5.0 0.6 1.0

Lanthanum binding site 5 out of 5 in 5ytq

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Lanthanum binding site 5 out of 5 in the Crystal Structure of TTHA0139 L34A with Lanthanum From Thermus Thermophilus HB8


Mono view


Stereo pair view

A full contact list of Lanthanum with other atoms in the La binding site number 5 of Crystal Structure of TTHA0139 L34A with Lanthanum From Thermus Thermophilus HB8 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:La102

b:0.6
occ:1.00
OE2 C:GLU15 2.5 0.1 1.0
CD C:GLU15 3.0 0.5 1.0
OE1 C:GLU15 3.0 1.0 1.0
OE1 C:GLU16 3.3 0.7 1.0
OE2 C:GLU16 3.3 0.1 1.0
CD C:GLU16 3.7 0.6 1.0
O C:HOH202 4.0 78.1 1.0
CG C:GLU15 4.3 0.4 1.0
CB C:SER14 5.0 78.9 1.0

Reference:

K.Takao, M.Inoue, K.Fukui, T.Yano, R.Masui. Crystal Structure of TTHA0139 L34A with Lanthanum From Thermus Thermophilus HB8 To Be Published.
Page generated: Mon Dec 14 03:14:30 2020

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