Chemical elements
  Lanthanum
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    PDB 1djg-2rpv
      1djg
      1kqv
      1ksm
      1nkf
      2i18
      2k0j
      2oqr
      2rpv

Lanthanum in the structure of The Structure of the Response Regulator REGX3 From Mycobacterium Tuberculosis (pdb 2oqr)






The binding sites of Lanthanum atom in the structure of The Structure of the Response Regulator REGX3 From Mycobacterium Tuberculosis (pdb code 2oqr). This binding sites where shown with 5.0 Angstroms radius around Lanthanum atom.
The 2oqr structure was solved by J.KING-SCOTT, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)20.0-2.0
Space groupP4212
a (A)124.351
b (A)124.351
c (A)44.824
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)17.7
Rfree (%)21.7


Lanthanum Binding Sites:

Lanthanum binding site 1 out of 5 in 2oqr


Lanthanum binding site 1 out of 5 in 2oqr
Click to enlarge
stereopicture of Lanthanum binding site 1 out of 5 in 2oqr
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Lanthanum in the PDB 2oqr. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Lanthanum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp82, A: Asp86, A: Asp97, A: Tyr98, A: Val99, A: Arg111, A: Hoh459, A: Hoh460, A: Hoh461, A: Hoh462, A: Hoh463, A: Hoh464, A: Hoh465, A: Hoh466, A: Hoh467, A: Hoh468, A: Hoh501, A: Hoh502,

conact list:


AtomAtomDistance (A)
LaO A:Asp824.55
LaCB A:Asp864.35
LaOD2 A:Asp862.43
LaOD1 A:Asp862.38
LaCG A:Asp862.80
LaCB A:Asp974.71
LaOD2 A:Asp972.42
LaOD1 A:Asp973.56
LaCG A:Asp973.33
LaO A:Tyr982.53
LaN A:Tyr984.08
LaCB A:Tyr984.78
LaC A:Tyr983.72
LaCA A:Tyr984.44
LaN A:Val994.74
LaCA A:Val994.89
LaNH2 A:Arg1114.56
LaNH1 A:Arg1114.69
LaO A:Hoh4594.61
LaO A:Hoh4602.53
LaO A:Hoh4614.26
LaO A:Hoh4622.39
LaO A:Hoh4632.42
LaO A:Hoh4644.01
LaO A:Hoh4652.33
LaO A:Hoh4662.55
LaO A:Hoh4674.93
LaO A:Hoh4684.77
LaO A:Hoh5014.68
LaO A:Hoh5024.81

interactive model:


Lanthanum binding site 2 out of 5 in 2oqr


Lanthanum binding site 2 out of 5 in 2oqr
Click to enlarge
stereopicture of Lanthanum binding site 2 out of 5 in 2oqr
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Lanthanum in the PDB 2oqr. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Lanthanum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Arg113, A: Gly176, A: Asp180, A: Asp186, A: Hoh533, A: Hoh548, A: Hoh549, A: Hoh550, A: Hoh551, A: Hoh552, A: Hoh553, A: Hoh554,

conact list:


AtomAtomDistance (A)
LaNH2 A:Arg1134.78
LaO A:Gly1764.90
LaCB A:Asp1804.44
LaOD2 A:Asp1802.49
LaOD1 A:Asp1802.65
LaCG A:Asp1802.92
LaN A:Asp1864.62
LaCB A:Asp1864.72
LaOD2 A:Asp1862.33
LaOD1 A:Asp1863.98
LaCG A:Asp1863.49
LaO A:Hoh5334.78
LaO A:Hoh5482.21
LaO A:Hoh5492.50
LaO A:Hoh5502.39
LaO A:Hoh5512.45
LaO A:Hoh5522.62
LaO A:Hoh5534.60
LaO A:Hoh5544.78

interactive model:


Lanthanum binding site 3 out of 5 in 2oqr


Lanthanum binding site 3 out of 5 in 2oqr
Click to enlarge
stereopicture of Lanthanum binding site 3 out of 5 in 2oqr
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Lanthanum in the PDB 2oqr. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Lanthanum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu11, A: Asp15, A: La304, A: Hoh431, A: Hoh432, A: Hoh433, A: Hoh434, A: Hoh436, A: Hoh438, A: Hoh439,

conact list:


AtomAtomDistance (A)
LaOE1 A:Glu112.57
LaOE2 A:Glu114.70
LaCD A:Glu113.68
LaCG A:Glu114.18
LaOD2 A:Asp152.67
LaOD1 A:Asp153.58
LaCG A:Asp153.52
LaLA A:La3044.25
LaO A:Hoh4314.67
LaO A:Hoh4322.55
LaO A:Hoh4332.48
LaO A:Hoh4344.12
LaO A:Hoh4364.82
LaO A:Hoh4384.50
LaO A:Hoh4392.71

interactive model:


Lanthanum binding site 4 out of 5 in 2oqr


Lanthanum binding site 4 out of 5 in 2oqr
Click to enlarge
stereopicture of Lanthanum binding site 4 out of 5 in 2oqr
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Lanthanum in the PDB 2oqr. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Lanthanum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu11, A: La303, A: Hoh433, A: Hoh434, A: Hoh435,

conact list:


AtomAtomDistance (A)
LaOE1 A:Glu112.61
LaOE2 A:Glu112.63
LaCD A:Glu112.96
LaCG A:Glu114.45
LaLA A:La3034.25
LaO A:Hoh4334.03
LaO A:Hoh4342.49
LaO A:Hoh4352.47

interactive model:


Lanthanum binding site 5 out of 5 in 2oqr


Lanthanum binding site 5 out of 5 in 2oqr
Click to enlarge
stereopicture of Lanthanum binding site 5 out of 5 in 2oqr
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Lanthanum in the PDB 2oqr. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Lanthanum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu8, A: Asp9, A: Glu10, A: Asp52, A: Met54, A: Leu55, A: Glu84, A: Hoh418, A: Hoh419, A: Hoh420, A: Hoh421, A: Hoh422,

conact list:


AtomAtomDistance (A)
LaOE2 A:Glu84.37
LaN A:Asp94.80
LaCB A:Asp94.29
LaOD2 A:Asp92.56
LaOD1 A:Asp92.47
LaCG A:Asp92.83
LaOE2 A:Glu104.43
LaCG A:Glu104.91
LaCB A:Asp524.39
LaOD2 A:Asp522.66
LaOD1 A:Asp522.40
LaCG A:Asp522.90
LaO A:Met542.33
LaN A:Met544.58
LaCB A:Met544.27
LaC A:Met543.55
LaCG A:Met544.88
LaCA A:Met544.34
LaN A:Leu554.59
LaCD1 A:Leu554.77
LaCA A:Leu554.87
LaOE1 A:Glu844.24
LaOE2 A:Glu842.35
LaCD A:Glu843.58
LaCG A:Glu844.67
LaO A:Hoh4184.72
LaO A:Hoh4194.55
LaO A:Hoh4202.48
LaO A:Hoh4212.25
LaO A:Hoh4222.23

interactive model:




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