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Lanthanum in PDB 2oqr: The Structure of the Response Regulator REGX3 From Mycobacterium Tuberculosis

Protein crystallography data

The structure of The Structure of the Response Regulator REGX3 From Mycobacterium Tuberculosis, PDB code: 2oqr was solved by J.King-Scott, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.97 / 2.03
Space group P 4 21 2
Cell size a, b, c (Å), α, β, γ (°) 124.351, 124.351, 44.824, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 21.7

Lanthanum Binding Sites:

The binding sites of Lanthanum atom in the The Structure of the Response Regulator REGX3 From Mycobacterium Tuberculosis (pdb code 2oqr). This binding sites where shown within 5.0 Angstroms radius around Lanthanum atom.
In total 5 binding sites of Lanthanum where determined in the The Structure of the Response Regulator REGX3 From Mycobacterium Tuberculosis, PDB code: 2oqr:
Jump to Lanthanum binding site number: 1; 2; 3; 4; 5;

Lanthanum binding site 1 out of 5 in 2oqr

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Lanthanum binding site 1 out of 5 in the The Structure of the Response Regulator REGX3 From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Lanthanum with other atoms in the La binding site number 1 of The Structure of the Response Regulator REGX3 From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:La301

b:11.3
occ:1.00
O A:HOH465 2.3 39.8 1.0
OD1 A:ASP86 2.4 45.6 1.0
O A:HOH462 2.4 38.5 1.0
OD2 A:ASP97 2.4 51.9 1.0
O A:HOH463 2.4 38.1 1.0
OD2 A:ASP86 2.4 45.7 1.0
O A:HOH460 2.5 34.0 1.0
O A:TYR98 2.5 43.1 1.0
O A:HOH466 2.6 27.4 1.0
CG A:ASP86 2.8 47.3 1.0
CG A:ASP97 3.3 52.0 1.0
OD1 A:ASP97 3.6 67.2 1.0
C A:TYR98 3.7 44.6 1.0
O A:HOH464 4.0 43.7 1.0
N A:TYR98 4.1 41.5 1.0
O A:HOH461 4.3 59.7 1.0
CB A:ASP86 4.4 46.7 1.0
CA A:TYR98 4.4 43.4 1.0
O A:ASP82 4.5 48.1 1.0
NH2 A:ARG111 4.6 61.5 1.0
O A:HOH459 4.6 50.5 1.0
O A:HOH501 4.7 57.0 1.0
NH1 A:ARG111 4.7 62.2 1.0
CB A:ASP97 4.7 42.9 1.0
N A:VAL99 4.7 45.9 1.0
O A:HOH468 4.8 35.4 1.0
CB A:TYR98 4.8 42.8 1.0
O A:HOH502 4.8 44.5 1.0
CA A:VAL99 4.9 47.4 1.0
O A:HOH467 4.9 33.3 1.0

Lanthanum binding site 2 out of 5 in 2oqr

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Lanthanum binding site 2 out of 5 in the The Structure of the Response Regulator REGX3 From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Lanthanum with other atoms in the La binding site number 2 of The Structure of the Response Regulator REGX3 From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:La302

b:11.5
occ:1.00
O A:HOH548 2.2 35.8 1.0
OD2 A:ASP186 2.3 51.1 1.0
O A:HOH550 2.4 38.3 1.0
O A:HOH551 2.4 36.2 1.0
OD2 A:ASP180 2.5 36.4 1.0
O A:HOH549 2.5 40.8 1.0
O A:HOH552 2.6 39.0 1.0
OD1 A:ASP180 2.7 44.2 1.0
CG A:ASP180 2.9 39.3 1.0
CG A:ASP186 3.5 52.1 1.0
OD1 A:ASP186 4.0 53.3 1.0
CB A:ASP180 4.4 45.0 1.0
O A:HOH553 4.6 53.1 1.0
N A:ASP186 4.6 47.3 1.0
CB A:ASP186 4.7 48.1 1.0
NH2 A:ARG113 4.8 42.5 1.0
O A:HOH554 4.8 49.1 1.0
O A:HOH533 4.8 39.4 1.0
O A:GLY176 4.9 49.0 1.0

Lanthanum binding site 3 out of 5 in 2oqr

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Lanthanum binding site 3 out of 5 in the The Structure of the Response Regulator REGX3 From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Lanthanum with other atoms in the La binding site number 3 of The Structure of the Response Regulator REGX3 From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:La303

b:15.3
occ:1.00
O A:HOH433 2.5 47.6 1.0
O A:HOH432 2.5 43.6 1.0
OE1 A:GLU11 2.6 36.2 1.0
OD2 A:ASP15 2.7 64.4 1.0
O A:HOH439 2.7 53.3 1.0
CG A:ASP15 3.5 50.2 1.0
OD1 A:ASP15 3.6 62.4 1.0
CD A:GLU11 3.7 37.9 1.0
O A:HOH434 4.1 45.0 1.0
CG A:GLU11 4.2 45.6 1.0
LA A:LA304 4.3 15.6 1.0
O A:HOH438 4.5 55.2 1.0
O A:HOH431 4.7 37.5 1.0
OE2 A:GLU11 4.7 39.8 1.0
O A:HOH436 4.8 44.8 1.0

Lanthanum binding site 4 out of 5 in 2oqr

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Lanthanum binding site 4 out of 5 in the The Structure of the Response Regulator REGX3 From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Lanthanum with other atoms in the La binding site number 4 of The Structure of the Response Regulator REGX3 From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:La304

b:15.6
occ:1.00
O A:HOH435 2.5 48.3 1.0
O A:HOH434 2.5 45.0 1.0
OE1 A:GLU11 2.6 36.2 1.0
OE2 A:GLU11 2.6 39.8 1.0
CD A:GLU11 3.0 37.9 1.0
O A:HOH433 4.0 47.6 1.0
LA A:LA303 4.3 15.3 1.0
CG A:GLU11 4.4 45.6 1.0

Lanthanum binding site 5 out of 5 in 2oqr

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Lanthanum binding site 5 out of 5 in the The Structure of the Response Regulator REGX3 From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Lanthanum with other atoms in the La binding site number 5 of The Structure of the Response Regulator REGX3 From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:La305

b:11.8
occ:1.00
O A:HOH422 2.2 35.5 1.0
O A:HOH421 2.2 36.4 1.0
O A:MET54 2.3 46.5 1.0
OE2 A:GLU84 2.4 48.1 1.0
OD1 A:ASP52 2.4 42.1 1.0
OD1 A:ASP9 2.5 51.0 1.0
O A:HOH420 2.5 35.9 1.0
OD2 A:ASP9 2.6 46.9 1.0
OD2 A:ASP52 2.7 39.6 1.0
CG A:ASP9 2.8 44.5 1.0
CG A:ASP52 2.9 45.2 1.0
C A:MET54 3.6 49.6 1.0
CD A:GLU84 3.6 49.9 1.0
OE1 A:GLU84 4.2 51.0 1.0
CB A:MET54 4.3 50.9 1.0
CB A:ASP9 4.3 48.6 1.0
CA A:MET54 4.3 50.2 1.0
OE2 A:GLU8 4.4 48.2 1.0
CB A:ASP52 4.4 45.5 1.0
OE2 A:GLU10 4.4 45.9 1.0
O A:HOH419 4.6 57.0 1.0
N A:MET54 4.6 48.9 1.0
N A:LEU55 4.6 51.0 1.0
CG A:GLU84 4.7 48.9 1.0
O A:HOH418 4.7 56.0 1.0
CD1 A:LEU55 4.8 51.6 1.0
N A:ASP9 4.8 47.9 1.0
CA A:LEU55 4.9 52.4 1.0
CG A:MET54 4.9 58.6 1.0
CG A:GLU10 4.9 48.7 1.0

Reference:

J.King-Scott, E.Nowak, E.Mylonas, S.Panjikar, M.Roessle, D.I.Svergun, P.A.Tucker. The Structure of A Full-Length Response Regulator From Mycobacterium Tuberculosis in A Stabilized Three-Dimensional Domain-Swapped, Activated State. J.Biol.Chem. V. 282 37717 2007.
ISSN: ISSN 0021-9258
PubMed: 17942407
DOI: 10.1074/JBC.M705081200
Page generated: Mon Dec 14 03:12:48 2020

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