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  Lanthanum
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    PDB 1djg-2rpv
      1djg
      1kqv
      1ksm
      1nkf
      2i18
      2k0j
      2oqr
      2rpv

Lanthanum in the structure of Phosphoinositide-Specific Phospholipase C-DELTA1 From Rat Complexed With Lanthanum (pdb 1djg)






The binding sites of Lanthanum atom in the structure of Phosphoinositide-Specific Phospholipase C-DELTA1 From Rat Complexed With Lanthanum (pdb code 1djg). This binding sites where shown with 5.0 Angstroms radius around Lanthanum atom.
The 1djg structure was solved by L.-O.ESSEN, O.PERISIC, R.L.WILLIAMS, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)10.0-2.6
Space groupF41321
a (A)397.920
b (A)397.920
c (A)397.920
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)21
Rfree (%)27


Lanthanum Binding Sites:

Lanthanum binding site 1 out of 8 in 1djg


Lanthanum binding site 1 out of 8 in 1djg
Click to enlarge
stereopicture of Lanthanum binding site 1 out of 8 in 1djg
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Lanthanum in the PDB 1djg. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Lanthanum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asn312, A: Tyr314, A: Glu341, A: Asp343, A: His356, A: Glu390, A: Hoh855, A: Hoh859, A: Hoh923, A: Hoh970, A: Hoh1018, A: Hoh1069,

conact list:


AtomAtomDistance (A)
LaCB A:Asn3124.97
LaND2 A:Asn3124.07
LaOD1 A:Asn3122.64
LaCG A:Asn3123.67
LaOH A:Tyr3144.62
LaOE1 A:Glu3413.70
LaCD A:Glu3414.91
LaCB A:Asp3434.49
LaOD2 A:Asp3432.63
LaOD1 A:Asp3432.68
LaCG A:Asp3432.99
LaCD2 A:His3564.99
LaOE1 A:Glu3902.52
LaCB A:Glu3904.67
LaOE2 A:Glu3903.67
LaCD A:Glu3903.39
LaCG A:Glu3904.62
LaO A:Hoh8553.76
LaO A:Hoh8594.59
LaO A:Hoh9234.59
LaO A:Hoh9703.51
LaO A:Hoh10182.49
LaO A:Hoh10694.06

interactive model:


Lanthanum binding site 2 out of 8 in 1djg


Lanthanum binding site 2 out of 8 in 1djg
Click to enlarge
stereopicture of Lanthanum binding site 2 out of 8 in 1djg
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Lanthanum in the PDB 1djg. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Lanthanum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Ser650, A: Ile651, A: Val652, A: Asp653, A: Asn677, A: La3, A: Hoh932, A: Hoh1032, A: Hoh1053, A: Hoh1075,

conact list:


AtomAtomDistance (A)
LaCB A:Ser6504.46
LaOG A:Ser6503.09
LaO A:Ile6512.50
LaN A:Ile6514.12
LaCB A:Ile6514.80
LaC A:Ile6513.69
LaCA A:Ile6514.46
LaO A:Val6524.50
LaN A:Val6524.70
LaC A:Val6524.45
LaCA A:Val6524.86
LaN A:Asp6534.63
LaCB A:Asp6534.33
LaOD2 A:Asp6532.45
LaOD1 A:Asp6532.57
LaCG A:Asp6532.84
LaCA A:Asp6534.97
LaN A:Asn6774.48
LaCB A:Asn6774.74
LaND2 A:Asn6774.34
LaOD1 A:Asn6772.45
LaCG A:Asn6773.64
LaCA A:Asn6774.61
LaLA A:La33.99
LaO A:Hoh9321.77
LaO A:Hoh10322.44
LaO A:Hoh10533.24
LaO A:Hoh10754.76

interactive model:


Lanthanum binding site 3 out of 8 in 1djg


Lanthanum binding site 3 out of 8 in 1djg
Click to enlarge
stereopicture of Lanthanum binding site 3 out of 8 in 1djg
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Lanthanum in the PDB 1djg. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Lanthanum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Ile651, A: Val652, A: Asp653, A: Asp706, A: Tyr707, A: Asp708, A: La2, A: La4, A: Hoh1032, A: Hoh1053, A: Hoh1075,

conact list:


AtomAtomDistance (A)
LaO A:Ile6514.73
LaC A:Val6525.00
LaN A:Asp6534.27
LaCB A:Asp6533.83
LaOD2 A:Asp6532.51
LaOD1 A:Asp6534.47
LaCG A:Asp6533.44
LaCA A:Asp6534.69
LaO A:Asp7064.73
LaCB A:Asp7064.67
LaOD2 A:Asp7063.39
LaC A:Asp7064.57
LaOD1 A:Asp7062.74
LaCG A:Asp7063.35
LaO A:Tyr7072.45
LaN A:Tyr7074.49
LaC A:Tyr7073.61
LaCA A:Tyr7074.64
LaN A:Asp7084.38
LaCB A:Asp7084.60
LaOD2 A:Asp7084.60
LaOD1 A:Asp7082.54
LaCG A:Asp7083.75
LaCA A:Asp7084.30
LaLA A:La23.99
LaLA A:La44.16
LaO A:Hoh10324.50
LaO A:Hoh10532.72
LaO A:Hoh10753.48

interactive model:


Lanthanum binding site 4 out of 8 in 1djg


Lanthanum binding site 4 out of 8 in 1djg
Click to enlarge
stereopicture of Lanthanum binding site 4 out of 8 in 1djg
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Lanthanum in the PDB 1djg. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Lanthanum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp706, A: Asp708, A: Asp714, A: La3, A: Hoh1053, A: Hoh1073,

conact list:


AtomAtomDistance (A)
LaCB A:Asp7064.78
LaOD2 A:Asp7063.35
LaOD1 A:Asp7064.80
LaCG A:Asp7064.10
LaCB A:Asp7084.58
LaOD2 A:Asp7082.81
LaOD1 A:Asp7082.86
LaCG A:Asp7083.15
LaCB A:Asp7144.44
LaOD2 A:Asp7143.13
LaOD1 A:Asp7144.13
LaCG A:Asp7143.65
LaLA A:La34.16
LaO A:Hoh10534.15
LaO A:Hoh10733.48

interactive model:


Lanthanum binding site 5 out of 8 in 1djg


Lanthanum binding site 5 out of 8 in 1djg
Click to enlarge
stereopicture of Lanthanum binding site 5 out of 8 in 1djg
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Lanthanum in the PDB 1djg. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Lanthanum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: His311, B: Asn312, B: Tyr314, B: Glu341, B: Asp343, B: Glu390, B: Hoh864, B: Hoh890, B: Hoh946, B: Hoh1045, B: Hoh1094, B: Hoh1118,

conact list:


AtomAtomDistance (A)
LaNE2 B:His3114.95
LaND2 B:Asn3124.16
LaOD1 B:Asn3122.79
LaCG B:Asn3123.80
LaOH B:Tyr3144.50
LaOE1 B:Glu3413.72
LaCD B:Glu3414.92
LaCB B:Asp3434.55
LaOD2 B:Asp3432.61
LaOD1 B:Asp3432.83
LaCG B:Asp3433.07
LaOE1 B:Glu3902.70
LaCB B:Glu3904.76
LaOE2 B:Glu3903.72
LaCD B:Glu3903.50
LaCG B:Glu3904.73
LaO B:Hoh8644.88
LaO B:Hoh8904.45
LaO B:Hoh9463.41
LaO B:Hoh10454.54
LaO B:Hoh10943.27
LaO B:Hoh11184.86

interactive model:


Lanthanum binding site 6 out of 8 in 1djg


Lanthanum binding site 6 out of 8 in 1djg
Click to enlarge
stereopicture of Lanthanum binding site 6 out of 8 in 1djg
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Lanthanum in the PDB 1djg. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Lanthanum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Ser650, B: Ile651, B: Val652, B: Asp653, B: Asn677, B: La3, B: Hoh918, B: Hoh920, B: Hoh965, B: Hoh1048, B: Hoh1049,

conact list:


AtomAtomDistance (A)
LaOG B:Ser6504.46
LaO B:Ile6512.35
LaN B:Ile6514.22
LaCB B:Ile6514.81
LaC B:Ile6513.55
LaCA B:Ile6514.38
LaO B:Val6524.60
LaN B:Val6524.54
LaC B:Val6524.49
LaCA B:Val6524.76
LaN B:Asp6534.63
LaCB B:Asp6534.44
LaOD2 B:Asp6532.93
LaOD1 B:Asp6532.47
LaCG B:Asp6533.01
LaN B:Asn6774.65
LaCB B:Asn6774.79
LaND2 B:Asn6774.41
LaOD1 B:Asn6772.53
LaCG B:Asn6773.72
LaCA B:Asn6774.66
LaLA B:La33.98
LaO B:Hoh9182.88
LaO B:Hoh9202.45
LaO B:Hoh9653.94
LaO B:Hoh10483.48
LaO B:Hoh10494.07

interactive model:


Lanthanum binding site 7 out of 8 in 1djg


Lanthanum binding site 7 out of 8 in 1djg
Click to enlarge
stereopicture of Lanthanum binding site 7 out of 8 in 1djg
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Lanthanum in the PDB 1djg. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Lanthanum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Ile651, B: Asp653, B: Asp706, B: Tyr707, B: Asp708, B: La2, B: La4, B: Hoh920, B: Hoh965, B: Hoh1048, B: Hoh1049,

conact list:


AtomAtomDistance (A)
LaO B:Ile6514.65
LaN B:Asp6534.34
LaCB B:Asp6534.00
LaOD2 B:Asp6533.46
LaOD1 B:Asp6534.17
LaCG B:Asp6533.63
LaCA B:Asp6534.82
LaO B:Asp7064.88
LaCB B:Asp7064.64
LaOD2 B:Asp7063.27
LaC B:Asp7064.68
LaOD1 B:Asp7062.64
LaCG B:Asp7063.26
LaO B:Tyr7072.55
LaN B:Tyr7074.53
LaC B:Tyr7073.65
LaCA B:Tyr7074.68
LaN B:Asp7084.40
LaCB B:Asp7084.59
LaOD2 B:Asp7084.45
LaOD1 B:Asp7082.45
LaCG B:Asp7083.67
LaCA B:Asp7084.38
LaLA B:La23.98
LaLA B:La43.66
LaO B:Hoh9204.81
LaO B:Hoh9654.06
LaO B:Hoh10482.51
LaO B:Hoh10493.15

interactive model:


Lanthanum binding site 8 out of 8 in 1djg


Lanthanum binding site 8 out of 8 in 1djg
Click to enlarge
stereopicture of Lanthanum binding site 8 out of 8 in 1djg
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Lanthanum in the PDB 1djg. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Lanthanum atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Asp706, B: Asp708, B: Asp714, B: La3, B: Hoh965, B: Hoh1048, B: Hoh1111, B: Hoh1124,

conact list:


AtomAtomDistance (A)
LaCB B:Asp7064.54
LaOD2 B:Asp7062.96
LaOD1 B:Asp7064.34
LaCG B:Asp7063.72
LaCB B:Asp7084.53
LaOD2 B:Asp7082.66
LaOD1 B:Asp7082.92
LaCG B:Asp7083.10
LaCB B:Asp7144.44
LaOD2 B:Asp7142.82
LaOD1 B:Asp7144.60
LaCG B:Asp7143.77
LaLA B:La33.66
LaO B:Hoh9654.61
LaO B:Hoh10483.50
LaO B:Hoh11113.38
LaO B:Hoh11244.42

interactive model:




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